Here is my ballot:

Best comedy: Fooly Cooly
Best romance/fantasy (Shoujo): Fruits Basket
Best artistic/alternative: Cardcaptor Sakura
Best original art in any book: Death Note
Best storyline: Fullmetal Achemist
Best action/adventure: Naruto
Best fighting: Yu Yu Hakusho
Best science fiction: Vandread
Best historical: Rurouni Kenshin.
Best horror : Hellsing