I had everyone healed at the Pokemon Center and I returned to the 11th floor at the Sliph Co. building. I got there and met with Giovanni once again. He talked and then we battled for the second time. His Pokemon were a bit more challenging this time than they were the last time we fought, but I still managed to pull through that battle without losing any of my Pokemon. Giovanni disappeared once he was beaten and the Silph Co. building was safe once again. The company president gave me the Master Ball and I left the building to take care of things at the local Pokemon Center. I swapped Pokemon around and I made my way to the Saffron City Gym to challenge Sabrina for the Marsh Badge. I got inside and battle a Gym trainer and then saved before moving on to the other parts of the Gym.