Aradia x Equius Really cute, and somewhat canon (or used to be, anyway)~ I just like how their personalities play off one another; a spirited girl (well, depending on if Aradia's alive or not) and an uptight guy. And also, this has to be the only ship I like in this comic, which is saying something.
Spoiler:- The Melancholy of Haruhi Suzumiya:
Haruhi x Itsuki How can I not possibly ship this, considering how much Itsuki enables Haruhi. I pretty much bought this couple when Itsuki first mentioned his deep interest for Haruhi, at least whenever Kyon wasn't around.
Kyon x Yuki These two suit one another well, imho. They seem to care deeply for one another, whether it be strictly platonic or possibly romantic, and you really only ever see Yuki show some emotion around Kyon.
Ash x Bianca First off, I love how Ash finally has a female rival. And as far as Ash and his relationship with his other rivals have been, this one is less competitive and more friendly. Also, I love the little running gag they have going on between them in which Bianca runs into Ash and sends him flying off into a nearby body water, which results in him taking some of his clothes off in front of her. Oh Bianca, that makes me wonder whether its just an accident, or if you are doing this on purpose to see a half-naked Ash. XD
Cheren x Hilda Ohhhhhhhhh, where to begin? Well, I just love how Cheren often challenges Hilda, and while doing so compliments her. And they've pretty much already have a really close relationship, being childhood friends and everything.
Dawn x Zoey Besides this pairing being downright adorable, these two really suit one another. I love how they comfort one another, and often blush when speaking to each other.
Spoiler:- Tales of Legendia:
Chloe x Senel First off... dammit, Senel, why do you have to be so dense and not notice the huge crush that Chloe has on you? OK, getting past that, I think their personalities mesh well, and they had a lot of cute moments, such as hugging in the rain at the end of Chloe's Character Quest.
Grune x Norma This pairing is not only goofy, but rather sad. They had a lot of cute moments together, such as walking around, singing and dancing. But also, when Grune vanished at the end, Norma seemed to react the most out of all the characters. ;_;