JadeShipping - Blue/Yellow
Blue could've given the feathers to anyone but Silver, but instead of Red, Green, Bill or Professor Oak, she chose Yellow, showing that she trusts her, more than Red or Green, and they look adorable together.
MangaPokeShipping - Red/Misty
All but stated.
QuietPairShipping - Green/Erika
I really liked what little interaction they had, and they seem like they would be good together.
AccidentialShipping - Gold/Whitney
Their interactions are fun to watch, and they complement eachother well. Plus, Gold sometimes need someone to keep him in line, and Whitney does that well.
IncidentalShipping - Silver/Jasmine
She's one of the few he goes out of his way to help.
FrontierShipping - Crystal/Emerald
Their older sister-younger brother dynamic is just adorable, interesting and a lot of fun to watch.
FranticShipping - Ruby/Sapphire
Because it's Canon, and her confession was justadorable
CommonerShipping - Diamond/Platinum
Because it's literally almost Canon, and his devotion to her safety is touching.
MangaAvalancheShipping - Pearl/Candice
If you think about it, their core motivations aren't very different; Willpower and Focus are just two different words for determination. And they have so much else in common, personality-wise.
AgencyShipping - Black/White
Too many reasons to list, chief among which, the countless shipping hints.
TeaShipping - Bill/Daisy Oak
Again, highly hinted to be Canon.
ViaShipping - Celio/Lanette
One of my favorites, right up there with Jade and Frontier. They look like they would be great together, both professionally and romantically.